Export Image
Image Dimensions
enter height or width. (aspect ratio is fixed)File Options
Export PWM values
pLogo statistics and parameters
| foreground (fg) | |
| foreground size | |
| background (bg) | |
| background size | |
| pLogo width |
statistically significant positions
| position | frequency | value | fixed |
|---|---|---|---|
Please cite:
O'Shea JP, Chou MF, Quader SA, Ryan JK, Church GM, & Schwartz D. (2013). pLogo: A probabilistic approach to visualizing sequence motifs. Nat Methods 10, 1211-1212.
| initial sequences | |
| duplicate sequences | |
| not part of majority width | |
| sequences with invalid characters | |
| final sequences for plogo generation |
generate pLogo
-
invalid foreground
-
invalid background
quick tutorial
close
- Click here to load sample foreground data.
- Click the "Protein" button to open the menu of protein background data sets.
- Click the "human" button to select the human proteomic background data set.
- Click the "generate pLogo" button above.
- Click the R at position -2 on the pLogo to make this residue fixed. Note the correlation with the P at position -3.
- Have fun!
